Pan genome-Potato
Pan-genome analysis of Potato includes:
(a) Variation in the number of gene clusters between the pan-genome and the core genome.
(b) Specific clusters.
(c) Core clusters, soft-core clusters, and dispensable clusters.
2136 1741 819 515 432 364 290 259 247 244 226 215 132 132 131 130 113 113 107 96 95 84 77 73 66 65 46 36
15390 0 500 1000 15000
● ● ● ● ● ● ● ●
● ● ● ● ● ● ● ●
● ● ● ● ● ● ● ● ●
● ●
● ● ● ●
● ● ● ● ● ● ● ● ● ● ●
●
● ● ● ● ● ● ● ● ●
● ● ● ● ●
● ● ● ●
● ●
● ●
● ● ● ●
● ● ●
● ●
●
● ● ● ● ● ●
● ● ● ●
●
● ● ●
●
● ● ● ●
● ● ● ● ●
● ●
● ● ●
●
● ● ●
●
● ● ● ●
● ● ● ● ● ●
● ● ●
●
●
● ●
● ● ● ● ● ● ●
●
● ● ●
● ● ●
● ●
● ● ● ● ● ●
● ● ●
●
● ●
RH10-15
RH
PG6359
E86-69
E4-63
A6-26
DM8
660 375 261 249 245 217 179 153 151 148 132 124 111 107 107 99 99 95 86 74 70 70 55 53 49 47 46 42
●
●
●
●
●
● ●
●
●
● ●
● ●
●
●
● ● ●
● ●
●
●
● ● ●
● ●
● ● ● ●
●
●
●
●
● ●
● ●
● ●
●
● ●
● ●
●
●
● ●
●
● ● ● ● ●
● ●
●
●
● ● ●
● ● ●
● ●
● ●
● ●
●
● ● ●
● ● ●
● ●
●
●
● ●
● ●
1500 2000
500 1000 15000
1500 2000
38 48 64 65 66 103 313
RH10-15
RH
PG6359
E86-69
E4-63
A6-26
DM8
0
100
200
300
Pan-Genome Size Core Genome Size
Genome Number Gene Cluster Number 1 0 2 3 4 5 6 7 12000 16000 20000 24000 28000 32000 36000 a b c Specific Core Soft-core Dispensable